Class: TissueSearch

TissueSearch

new TissueSearch(baseURL, appID, appKey)

Parameters:
Name Type Description
baseURL string URL for the Open PHACTS API
appID string Application ID for the application being used. Created by https://dev.openphacts.org
appKey string Application Key for the application ID.
Author:
License:
Source:

Methods

fetchTissue(URI, lensopt, callback)

Fetch the tissue represented by the URI provided.
Parameters:
Name Type Attributes Description
URI string The URI for the tissue of interest.
lens string <optional>
 An optional lens to apply to the result.
callback requestCallback Function that will be called with the result.
Source:
Example
var searcher = new TissueSearch("https://beta.openphacts.org/2.1", "appID", "appKey");
var callback=function(success, status, response){
   var tissueResult = searcher.parseTissueResponse(response);
};
searcher.fetchTissue('ftp://ftp.nextprot.org/pub/current_release/controlled_vocabularies/caloha.obo#TS-0171', null, callback);

fetchTissueBatch(URIList, lensopt, callback)

Fetch the mutiple tissues represented by the URIs provided.
Parameters:
Name Type Attributes Description
URIList Array.<string> A list of URIs for the tissue of interest.
lens string <optional>
 An optional lens to apply to the result.
callback requestCallback Function that will be called with the result.
Source:
Example
var searcher = new TissueSearch("https://beta.openphacts.org/2.1", "appID", "appKey");
var callback=function(success, status, response){
   var tissueResult = searcher.parseTissueBatchResponse(response);
};
searcher.fetchTissueBatch(['ftp://ftp.nextprot.org/pub/current_release/controlled_vocabularies/caloha.obo#TS-0171', 'ftp://ftp.nextprot.org/pub/current_release/controlled_vocabularies/caloha.obo#TS-0173'], null, callback);

parseTissueBatchResponse(response) → {Array.<FetchTissueResponse>}

Parse the results from TissueSearch#fetchTissueBatch
Parameters:
Name Type Description
response Object the JSON response from TissueSearch#fetchTissueBatch
Source:
Returns:
Containing the flattened response
Type
Array.<FetchTissueResponse>

parseTissueResponse(response) → {FetchTissueResponse}

Parse the results from TissueSearch#fetchTissue
Parameters:
Name Type Description
response Object the JSON response from TissueSearch#fetchTissue
Source:
Returns:
Containing the flattened response
Type
FetchTissueResponse