openphacts github Repositories
Building and Deploying the OPS Platform
A Docker Compose configuration to bring to life the Open PHACTS platform on Docker.
Most of the docker images are in https://hub.docker.com/u/openphacts/ from other GitHub repositores (See below) - while others are specialized within this repository (e.g. mysql).
- Slides: http://slides.com/soilandreyes/2016-07-06-openphacts#/
- Webinar and Video
- has Dockerfile - Uses Docker Compose
- Does not include 3-scale (https + api key authentication)
- includes stack from virtuoso up to explorer2
- not included: CRS (runs on Windows), ConceptWiki (shared instance)
Q: What does ops-docker depend on?
This is a “meta” repository that contains notes and a few bits-and-bobs scripts and config files. It can’t be “run” by itself.
has 2.0.0 branch, no 2.1.
platform w/o data
Core OPS Components
PHP implemenation of the Open PHACTS API.
api-config-files contains Puelia templates.
Web Service Dependencies:
Java. Last edited 2016/04.
The Standalone Query Expander.
Depends on repos:
Java application and web service to obtain URI mappings.
Last commit: 2016/04
The Open PHACTS Explorer is an HTML5 & CSS3 application for chemical information discovery and browsing. It is used to search for chemical compound and target information using a web search interface.
Last updated: 2015/11
Has Dockerfile. Has Docker image openphacts/explorer2.
Uses / depends-on:
The sources of the Royal Society of Chemistry’s (RSC) Chemical Registration Service (CRS).
The CRS is a top-level component of the Open PHACTS platform. However, it is not part of the Open PHACTS distribution. Rather, it’s functionality is provided via web apps running at http://www.rsc.org.
/structure commands of the Open PHACTS API are forwarded to the CRS web app. Thus those
commands will fail if you are not connected to the internet.
The CRS is a Microsoft .NET and C# web application.
Last updated: 2016/07
Currently “broken” (2016/10).
Projects using Open PHACTS
ElasticSearch-based search service for Open PHACTS, previously called “IRS2”. Under development.
has Dockerfile for testing
- Used by
- Published on https://www.npmjs.com/package/ops.js
- Can be executed standalone as it includes comprehensive tests of API (using node.js)
Available as an npm package (for 1.5): https://www.npmjs.com/package/ops.js
A simple Scala + Java test app that wraps a few example calls to the Linked Data API and pulls content out of the returned JSON.
Scala, Java, 2013
Data and Linksets
Testing of IMS linksets in Open PHACTS
forked from egonw/chembl.rdf 2013
Workflows for the testing the data and filters from the Open PHACTS API
Linked Data Reactor. Forked from ali1k/ld-r
The Void Validator, stripped out of the BridgeDb project, exposed via a web service.
Displays the information available in the Open PHACTS Linked Data cache about a compound
This is the repo for the central GUI API and GUI components code.
forked from amarillion/BridgeDb, updated Dec 2014
forked from biojs/biojs. 2014
forked from egonw/jqudt
GitHub Issue Tracker for hosting provider.
Issues (1) 2016
Issues Private 2016/09
forked from fundatureanu-sever/DocsGenerator
A repository hosting a Java helper application to generate response template descriptions for API methods, with color-coded markup in HTML.
ops platform and larkc plugins
Repo for all general widgets in the project.
Purely for testing Github. DO NOT save anything here